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Table 2 Overlap of top 100 selected SNPs by the lasso and synthesis regression

From: A multivariable approach for risk markers from pooled molecular data with only partial overlap

SNP

rank lasso

rank Boosting

IF full

rs894243

12

5

0.14

rs80159021

21

1

0.00

rs7041984

25

9

0.00

rs7039441

32

40

0.68

rs7020755

60

4

0.00

rs6475560

71

30

0.00

  1. The SNPs have been ordered in an increasing way according to their position in the selection sequence when applying the lasso with different values for λ (rank lasso). rank Boosting details the SNP’s ranks according to the inclusion frequencies returned by the application of boosting. IF full shows the inclusion frequencies when applying synthesis regression to the original study A data including missings
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BMC Medical Genetics

ISSN: 1471-2350

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